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2021 Report Open Access OPEN

ARIADNEPlus - VREs operation mid-term activity report
Assante M., Cirillo R., Dell'Amico A., Pagano P., Candela L., Frosini L., Lelii L., Mangiacrapa F., Panichi G., Sinibaldi F.
This deliverable D13.2 - "VREs Operation Mid-term Activity Report" describes the activities carried out during the first 24 months of the ARIADNEplus project within Work Package 13. Specifically, in Task 13.1 Infrastructure Operation (JRA2.1) and Task 13.3 VREs Operation (JRA2.3). It reports the procedures governing the operation of the VREs as well as the status of the aggregated resources at mid-term in the ARIADNEplus infrastructure.Source: Project report, ARIADNEplus, D13.2, 2021
Project(s): ARIADNEplus via OpenAIRE

See at: ISTI Repository Open Access | CNR ExploRA Open Access


2021 Report Open Access OPEN

EOSC Pillar - D.5.2 FAIR Research Data Management Workbench Operation Report
Candela L., Cazenave N., Frosini L., Le Fran Y., Mangiacrapa F.
EOSC-Pillar is developing and integrating a set of tools and services overall supporting the construction and maintenance of an aggregated data space implementing the FAIR principles. This deliverable documents the activities and results (e.g., indicators on integrated data providers, and datasets, indicators on datasets accesses) of the operation of the EOSC-Pillar toolset enacting the development of the EOSC-Pillar data space. This first release of this typology of deliverable gives early indicators about the exploitation of the proposed services. The data space will be actually developed in the second period of the project.Source: Project report, EOSC-Pillar, D5.2, 2021
Project(s): EOSC-Pillar via OpenAIRE

See at: ISTI Repository Open Access | CNR ExploRA Open Access


2020 Article Open Access OPEN

Realizing virtual research environments for the agri-food community: the AGINFRA PLUS experience
Assante M., Boizet A., Candela L., Castelli D., Cirillo R., Coro G., Fernández E., Filter M., Frosini L., Georgiev T., Kakaletris G., Katsivelis P., Knapen R., Lelii L., Lokers R. M., Mangiacrapa F., Manouselis N., Pagano P., Panichi G., Penev L., Sinibaldi F.
The enhancements in IT solutions and the open science movement are injecting changes in the practices dealing with data collection, collation, processing, analytics, and publishing in all the domains, including agri-food. However, in implementing these changes one of the major issues faced by the agri-food researchers is the fragmentation of the "assets" to be exploited when performing research tasks, for example, data of interest are heterogeneous and scattered across several repositories, the tools modelers rely on are diverse and often make use of limited computing capacity, the publishing practices are various and rarely aim at making available the "whole story" including datasets, processes, and results. This paper presents the AGINFRA PLUS endeavor to overcome these limitations by providing researchers in three designated communities with Virtual Research Environments facilitating the use of the "assets" of interest and promote collaboration.Source: Concurrency and computation (Online) (2020). doi:10.1002/cpe.6087
DOI: 10.1002/cpe.6087
Project(s): AGINFRA PLUS via OpenAIRE

See at: ISTI Repository Open Access | Wageningen Yield Restricted | onlinelibrary.wiley.com Restricted | Concurrency and Computation Practice and Experience Restricted | Concurrency and Computation Practice and Experience Restricted | CNR ExploRA Restricted


2020 Other Unknown

gCube Workspace environment [Release 6.24.1]
Mangiacrapa F.
The gCube Workspace environment represents a collaborative area in which users can save, exchange, share, create public links and organize information objects (files) according to their specific needs. Because of this, every user of any Virtual Research Environment in the D4Science Infrastructure is provided with this area.Project(s): Blue Cloud via OpenAIRE

See at: code-repo.d4science.org | CNR ExploRA


2020 Other Unknown

gCube D4Science Data Catalog [Release 1.9.0]
Mangiacrapa F.
The gCube Data Catalogue is a software component that provides facilities for: a) (meta)data publishing; b) vres' products publishing; c) making data products publicly available; d) enriching products of metadata to maximise their potential reuse and making them searchable (via title, tags etc) are based on the CKAN technology. The gcube-ckan-datacatalog Web Application allows to (a) show all the metadata available in the CKAN instance, as well as publish a new product, retrieve the list of organizations (i.e. Virtual Research Environments) to which the user belongs and his/her already published products.Project(s): Blue Cloud via OpenAIRE

See at: code-repo.d4science.org | CNR ExploRA


2020 Other Restricted

D4Science Catalogue Service
Mangiacrapa F.
Nota tecnica che documenta (brevemente) la piattaforma software open source "D4Science Catalogue Service" progettata e sviluppata da F. Mangiacrapa e ne dimostra l'uso da parte della comunità scientifica.

See at: CNR ExploRA Restricted


2020 Report Open Access OPEN

Blue Cloud - D4.2: Blue Cloud VRE Common Facilities (Release 1)
Assante M., Candela L., Pagano P., Dell'Amico A., Coro G., Cirillo R., Frosini L., Lelii L., Lettere M., Mangiacrapa F., Panichi G., Sinibaldi F.
The Blue-Cloud project plans to pilot a cyber platform bringing together and providing access to multidisciplinary data from observations and models, analytical tools, and computing facilities essential to support research to understand better and manage the many aspects of ocean sustainability. To achieve this goal, Blue-Cloud is developing, deploying, and operating the Blue-Cloud platform whose architecture consists of two families of components: (a) the Blue Cloud Data Discovery and Access service component to serve federated discovery and access to 'blue data' infrastructures; and (b) the Blue Cloud Virtual Research Environment (VRE) component to provide a Blue Cloud VRE as a federation of computing platforms and analytical services. This deliverable presents the Blue Cloud Virtual Research Environment constituents by focusing on both new services and revised existing services that have been developed in the reporting period to serve the needs of the Blue Cloud community. In particular, this deliverable describes a total of 11 services and components. These services and components contribute functionalities to the Blue Cloud VRE Enabling Framework (Identity and Access Management, VRE Management), Collaborative framework (Workspace and Social Networking), Analytics Framework (Software and Algorithm Importer, Smart Executor), Publishing Framework (Catalogue Service) and improved support for RStudio, JupyterHub, ShinyProxy, and Docker Applications. The services are described below by reporting their design principles, architectures, and main features. The deliverable also describes the procedures and approaches governing services and components released by highlighting how Gitea (as Git hosting service), Jenkins (as automation server), and Maven (as project management and comprehension tool) are used to guarantee continuous integration processes. Services and components discussed in this deliverable contribute to 11 gCube open-source software system releases (from gCube 4.16 up to gCube 4.25.1) and are in the pipeline for the next ones. They have been used to develop and operate the Virtual Laboratories of the Blue Cloud gateway https://blue-cloud.d4science.org and its underlying infrastructure. At the time of this deliverable (November 2020), the gateway hosts a total of 8 VREs and VLabs, including five specifically conceived to support the co-development of some of the Blue-Cloud demonstrators (namely, the Aquaculture Atlas Generation for Demonstrator #5, the Blue-Cloud Lab for several demonstrators, the GRSF pre for Demonstrator #4, the Marine Environmental Indicators for Demonstrator #3, the Zoo-Phytoplankton EOV for Demonstrator #1). This gateway and its tools serve more than 400 users that (since January 2020) performed a total of more than 5000 working sessions, more than 1700 accesses to the Workspace, and more than 750 analytics tasks. These exploitation and uptake indicators are likely to grow in the coming months thanks to data updates and continued use, further development of existing VLabs, and finally, the creation of new ones.Source: Project Report, Blue Cloud, D4.2, 2020
Project(s): Blue Cloud via OpenAIRE

See at: ISTI Repository Open Access | CNR ExploRA Open Access


2020 Report Open Access OPEN

RISIS 2 - Opening of Open Data VRE
Assante M., Baglioni M., Bardi A., Mangiacrapa F., Pagano P.
This report is a short document accompanying the Deliverable "D4.2 Opening of Open Data VRE", which is of type: "Websites, patents filling, etc.". It describes the design of the software components involved in the Open Data VRE, deployed to serve the current needs of the RISIS community.Source: Project report, RISIS 2, D4.2, 2020
Project(s): RISIS 2 via OpenAIRE

See at: ISTI Repository Open Access | CNR ExploRA Open Access


2019 Report Open Access OPEN

SoBigData - D10.7 - SoBigData e-infrastructure and VRE release
Assante M., Candela L., Cirillo R., Frosini L., Lelii L., Mangiacrapa F., Pagano P.
This deliverable describes the software that has been deployed to serve the needs of the SoBigData community, by delivering the platform and the VREs planned in "D10.4 SoBigData e-Infrastructure release plan 3". In particular, it reports on how such software has been exploited to make available the envisaged components, i.e. the SoBigData portal (and the underlying Virtual Organisation), the SoBigData Catalogue and the SoBigData Virtual Research Environments, together with the list and pointers to the software packages produced by the project and implementing such components, whose operation today constitutes the SoBigData e-infrastructure accessible from http://sobigdata.d4science.org.Source: Project report, SoBigData, Deliverable D10.7, pp.1–28, 2019
Project(s): SoBigData via OpenAIRE

See at: data.d4science.net Open Access | ISTI Repository Open Access | CNR ExploRA Open Access


2019 Part of book or chapter of book Open Access OPEN

Methods and tools for supporting the integration of stocks and fisheries
Tzitzikas Y., Marketakis Y., Minadakis N., Mountantonakis M., Candela L., Mangiacrapa F., Pagano P., Perciante C., Castelli D., Taconet M., Gentile A., Gorelli G.
The collation of information for the monitoring of fish stocks and fisheries is a difficult and time-consuming task, as the information is scattered across different databases and is modelled using different formats and semantics. Our purpose is to offer a unified view of the existing stocks and fisheries information harvested from three different database sources (FIRMS, RAM and FishSource), by relying on innovative data integration and manipulation facilities. In this paper, we describe the building blocks in terms of methods and software components that are necessary for integrating stocks and fisheries data from heterogeneous data sources.Source: Information and Communication Technologies in Modern Agricultural Development, edited by Salampasis M., Bournaris T., pp. 20–34, 2019
DOI: 10.1007/978-3-030-12998-9_2
Project(s): BlueBRIDGE via OpenAIRE

See at: link.springer.com Open Access | ISTI Repository Open Access | CNR ExploRA Open Access | Unknown Repository Restricted | Unknown Repository Restricted | Unknown Repository Restricted


2019 Article Open Access OPEN

Enacting open science by D4Science
Assante M., Candela L., Castelli D., Cirillo R., Coro G., Frosini L., Lelii L., Mangiacrapa F., Pagano P., Panichi G., Sinibaldi F.
The open science movement is promising to revolutionise the way science is conducted with the goal to make it more fair, solid and democratic. This revolution is destined to remain just a wish if it is not supported by changes in culture and practices as well as in enabling technologies. This paper describes the D4Science offerings to enact open science-friendly Virtual Research Environments. In particular, the paper describes how complete solutions suitable for realising open science practices can be achieved by integrating a social networking collaborative environment with a shared workspace, an open data analytics platform, and a catalogue enabling to effectively find, access and reuse every research artefact.Source: Future generation computer systems (2019). doi:10.1016/j.future.2019.05.063
DOI: 10.1016/j.future.2019.05.063
Project(s): AGINFRA PLUS via OpenAIRE, BlueBRIDGE via OpenAIRE, ENVRI PLUS via OpenAIRE, EOSCpilot via OpenAIRE

See at: DOI Resolver Open Access | ISTI Repository Open Access | CNR ExploRA Open Access | Future Generation Computer Systems Restricted | Future Generation Computer Systems Restricted | Future Generation Computer Systems Restricted | Future Generation Computer Systems Restricted | Future Generation Computer Systems Restricted | Future Generation Computer Systems Restricted


2019 Other Unknown

gCube D4Science Data Catalog [Release 1.7.0]
Mangiacrapa F., Perciante C.
The gCube Data Catalogue is a software component that provides facilities for: a) (meta)data publishing; b) vres' products publishing; c) making data products publicly available; d) enriching products of metadata to maximise their potential reuse and making them searchable (via title, tags etc) are based on the CKAN technology. The gcube-ckan-datacatalog Web Application allows to (a) show all the metadata available in the CKAN instance, as well as publish a new product, retrieve the list of organizations (i.e. Virtual Research Environments) to which the user belongs and his/her already published products.Project(s): AGINFRA PLUS via OpenAIRE, BlueBRIDGE via OpenAIRE

See at: code-repo.d4science.org | CNR ExploRA


2019 Other Unknown

gCube Workspace environment [Release 6.23.0]
Mangiacrapa F.
The gCube Workspace environment represents a collaborative area in which users can save, exchange, share, create public links and organize information objects (files) according to their specific needs. Because of this, every user of any Virtual Research Environment in the D4Science Infrastructure is provided with this area.Project(s): AGINFRA PLUS via OpenAIRE, BlueBRIDGE via OpenAIRE

See at: CNR ExploRA | www.gcube-system.org


2018 Article Open Access OPEN

The gCube system: delivering virtual research environments as-a-service
Assante M., Candela L., Castelli D., Cirillo R., Coro G., Frosini L., Lelii L., Mangiacrapa F., Marioli V., Pagano P., Panichi G., Perciante C., Sinibaldi F.
Important changes have characterised research and knowledge production in recent decades. These changes are associated with developments in information technologies and infrastructures. The processes characterising research and knowledge production are changing through the digitalization of science, the virtualisation of research communities and networks, the offering of underlying systems and services by infrastructures. This paper gives an overview of gCube, a software system promoting elastic and seamless access to research assets (data, services, computing) across the boundaries of institutions, disciplines and providers to favour collaboration-oriented research tasks. gCube's technology is primarily conceived to enable Hybrid Data Infrastructures facilitating the dynamic definition and operation of Virtual Research Environments. To this end, it offers a comprehensive set of data management commodities on various types of data and a rich array of "mediators" to interface well-established Infrastructures and Information Systems from various domains. Its effectiveness has been proved by operating the D4Science.org infrastructure and serving concrete, multidisciplinary, challenging, and large scale scenarios.Source: Future generation computer systems (2018). doi:10.1016/j.future.2018.10.035
DOI: 10.1016/j.future.2018.10.035
DOI: 10.5281/zenodo.3080895
DOI: 10.5281/zenodo.3080894
Project(s): AGINFRA PLUS via OpenAIRE, BlueBRIDGE via OpenAIRE, ENVRI PLUS via OpenAIRE, EOSCpilot via OpenAIRE

See at: ISTI Repository Open Access | CNR ExploRA Open Access | www.sciencedirect.com Open Access | Zenodo Open Access | Future Generation Computer Systems Open Access | Future Generation Computer Systems Restricted | Future Generation Computer Systems Restricted | Future Generation Computer Systems Restricted | Future Generation Computer Systems Restricted | Future Generation Computer Systems Restricted | Future Generation Computer Systems Restricted


2018 Other Unknown

gCube Data Catalogue: gcube-ckan-datacatalog [Release 1.6.0]
Mangiacrapa F., Perciante C.
The gCube Data Catalogue is a software component that provides facilities for: a) (meta)data publishing; b) vres' products publishing; c) making data products publicly available; d) enriching products of metadata to maximise their potential reuse and making them searchable (via title, tags etc) are based on the CKAN technology. The gcube-ckan-datacatalog Web Application allows to (a) show all the metadata available in the CKAN instance, as well as publish a new product, retrieve the list of organizations (i.e. Virtual Research Environments) to which the user belongs and his/her already published products.Project(s): BlueBRIDGE via OpenAIRE

See at: CNR ExploRA | www.gcube-system.org


2018 Other Unknown

gCube Workspace environment [Release 6.20.0]
Mangiacrapa F.
The gCube Workspace environment represents a collaborative area in which users can save, exchange, share, create public links and organize information objects (files) according to their specific needs. Because of this, every user of any Virtual Research Environment in the D4Science Infrastructure is provided with this area.Project(s): BlueBRIDGE via OpenAIRE, IMARINE via OpenAIRE

See at: CNR ExploRA | www.gcube-system.org


2017 Conference object Open Access OPEN

Towards a global record of stocks and fisheries
Tzitzikas Y., Marketakis Y., Minadakis N., Mountantonakis M., Candela L., Mangiacrapa F., Pagano P., Perciante C., Castelli D., Taconet M., Gentile A., Gorelli G.
The collation of information for the monitoring of fish stocks and fisheries is a difficult and time-consuming task, as the information is scattered across different databases and is modelled using different formats and semantics. Our purpose is to offer a unified view of the existing stocks and fisheries information harvested from three different database sources (FIRMS, RAM and FishSource), by relying on innovative data integration and manipulation facilities. In this paper, we describe the activities carried out to realize the Global Record of Stocks and Fisheries (GRSF) which aims at offering an integrated and enriched view on data about fish stocks and fisheries from the database sources. More specifically we describe the model, the workflow and the software components for producing GRSF records and make them easily available to the users.Source: 8th International Conference on Information and Communication Technologies in Agriculture, Food and Environment, pp. 328–340, Chania, Greece, 21-24 September 2017
Project(s): BlueBRIDGE via OpenAIRE

See at: ceur-ws.org Open Access | ISTI Repository Open Access | CNR ExploRA Open Access


2017 Other Unknown

gCube GeoExplorer
Mangiacrapa F.
gCube GeoExplorer is a web application that allows users to navigate, search, organize and download GIS Layers. GeoExplorer operates on a GeoNetwork instance in order to discover layers (and metadata) residing on a distributed e-Infrastructure.Project(s): IMARINE via OpenAIRE

See at: CNR ExploRA | www.gcube-system.org


2017 Other Unknown

gCube GisViewer
Mangiacrapa F.
gCube GisViewer is a web application that allows users to explore and analyze geospatial data on an interactive map. The GisViewer can show one or more layers allowing users to analyze information of a layer and the relationships among more layers (through overlaps, transparencies, export formats and filters).Project(s): IMARINE via OpenAIRE

See at: CNR ExploRA | www.gcube-system.org


2017 Other Unknown

gCube Workspace environment
Mangiacrapa F.
The gCube Workspace environment represents a collaborative area in which users can save, exchange, share, create public links and organize information objects (files) according to their specific needs. Because of this, every user of any Virtual Research Environment in the D4Science Infrastructure is provided with this area.Project(s): IMARINE via OpenAIRE

See at: CNR ExploRA | www.gcube-system.org