2021
Conference article  Open Access

Assessing pattern recognition performance of neuronal cultures through accurate simulation

Lagani G, Mazziotti R, Falchi F, Gennaro C, Cicchini Gm, Pizzorusso T, Cremisi F, Amato G

Computer vision  simulation  MEA  STDP  neural network  artificial intelligence  Computer Vision and Pattern Recognition (cs.CV)  FOS: Computer and information sciences  Bio-inspired  Neural networks  bioinspired artificial intelligence  neuronal culture  Spiking  Computer Science - Computer Vision and Pattern Recognition 

Previous work has shown that it is possible to train neuronal cultures on Multi-Electrode Arrays (MEAs), to recognize very simple patterns. However, this work was mainly focused to demonstrate that it is possible to induce plasticity in cultures, rather than performing a rigorous assessment of their pattern recognition performance. In this paper, we address this gap by developing a methodology that allows us to assess the performance of neuronal cultures on a learning task. Specifically, we propose a digital model of the real cultured neuronal networks; we identify biologically plausible simulation parameters that allow us to reliably reproduce the behavior of real cultures; we use the simulated culture to perform handwritten digit recognition and rigorously evaluate its performance; we also show that it is possible to find improved simulation parameters for the specific task, which can guide the creation of real cultures.

Source: INTERNATIONAL IEEE/EMBS CONFERENCE ON NEURAL ENGINEERING, pp. 726-729. Online, 4-6/05/2021


[1] M. E. Ruaro, P. Bonifazi, and V. Torre, “Toward the neurocomputer: image processing and pattern recognition with neuronal cultures,” IEEE Transactions on Biomedical Engineering, vol. 52, no. 3, pp. 371-383, 2005.
[2] J. M. Ferra´ndez, V. Lorente, F. de la Paz, and E. Ferna´ndez, “Training biological neural cultures: Towards hebbian learning,” Neurocomputing, vol. 114, pp. 3-8, 2013.
[3] G. Shahaf and S. Marom, “Learning in networks of cortical neurons,” Journal of Neuroscience, vol. 21, no. 22, pp. 8782-8788, 2001.
[4] A. Goel and D. V. Buonomano, “Temporal interval learning in cortical cultures is encoded in intrinsic network dynamics,” Neuron, vol. 91, no. 2, pp. 320-327, 2016.
[5] G. W. Gross, E. Rieske, G. Kreutzberg, and A. Meyer, “A new fixedarray multi-microelectrode system designed for long-term monitoring of extracellular single unit neuronal activity in vitro,” Neuroscience letters, vol. 6, no. 2-3, pp. 101-105, 1977.
[6] J. Pine, “Recording action potentials from cultured neurons with extracellular microcircuit electrodes,” Journal of neuroscience methods, vol. 2, no. 1, pp. 19-31, 1980.
[7] Y. LeCun, L. Bottou, Y. Bengio, P. Haffner, et al., “Gradient-based learning applied to document recognition,” Proceedings of the IEEE, vol. 86, no. 11, pp. 2278-2324, 1998.
[8] M. Eiraku, K. Watanabe, M. Matsuo-Takasaki, M. Kawada, S. Yonemura, M. Matsumura, T. Wataya, A. Nishiyama, K. Muguruma, and Y. Sasai, “Self-organized formation of polarized cortical tissues from escs and its active manipulation by extrinsic signals,” Cell stem cell, vol. 3, no. 5, pp. 519-532, 2008.
[9] N. Gaspard, T. Bouschet, R. Hourez, J. Dimidschstein, G. Naeije, J. Van den Ameele, I. Espuny-Camacho, A. Herpoel, L. Passante, S. N. Schiffmann, et al., “An intrinsic mechanism of corticogenesis from embryonic stem cells,” Nature, vol. 455, no. 7211, pp. 351-357, 2008.
[10] S. M. Chambers, C. A. Fasano, E. P. Papapetrou, M. Tomishima, M. Sadelain, and L. Studer, “Highly efficient neural conversion of human es and ips cells by dual inhibition of smad signaling,” Nature biotechnology, vol. 27, no. 3, pp. 275-280, 2009.
[11] M. Terrigno, I. Busti, C. Alia, M. Pietrasanta, I. Arisi, M. D'Onofrio, M. Caleo, and F. Cremisi, “Neurons generated by mouse escs with hippocampal or cortical identity display distinct projection patterns when co-transplanted in the adult brain,” Stem cell reports, vol. 10, no. 3, pp. 1016-1029, 2018.
[12] J. T. Gonc¸alves, S. T. Schafer, and F. H. Gage, “Adult neurogenesis in the hippocampus: from stem cells to behavior,” Cell, vol. 167, no. 4, pp. 897-914, 2016.
[13] M. Bertacchi, L. Pandolfini, M. D'Onofrio, R. Brandi, and F. Cremisi, “The double inhibition of endogenously produced bmp and w nt factors synergistically triggers dorsal telencephalic differentiation of mouse es cells,” Developmental neurobiology, vol. 75, no. 1, pp. 66- 79, 2015.
[14] W. Gerstner and W. M. Kistler, Spiking neuron models: Single neurons, populations, plasticity. Cambridge university press, 2002.
[15] F. Jug, “On competition and learning in cortical structures,” Ph.D. dissertation, ETH Zurich, 2012.
[16] A. Shrestha, K. Ahmed, Y. Wang, and Q. Qiu, “Stable spike-timing dependent plasticity rule for multilayer unsupervised and supervised learning,” in 2017 International Joint Conference on Neural Networks (IJCNN). IEEE, 2017, pp. 1999-2006.
[17] H. Hazan, D. J. Saunders, H. Khan, D. T. Sanghavi, H. T. Siegelmann, and R. Kozma, “Bindsnet: A machine learningoriented spiking neural networks library in python,” Frontiers in neuroinformatics, vol. 12, p. 89, 2018. [Online]. Available: https://github.com/BindsNET/bindsnet
[18] S. Grossberg, “Adaptive pattern classification and universal recoding: I. parallel development and coding of neural feature detectors,” Biological cybernetics, vol. 23, no. 3, pp. 121-134, 1976.
[19] R. J. Williams, “Simple statistical gradient-following algorithms for connectionist reinforcement learning,” Machine learning, vol. 8, no. 3-4, pp. 229-256, 1992.
[20] R. V. Florian, “A reinforcement learning algorithm for spiking neural networks,” in Seventh International Symposium on Symbolic and Numeric Algorithms for Scientific Computing (SYNASC'05). IEEE, 2005, pp. 8-pp.
[21] S. Skorheim, P. Lonjers, and M. Bazhenov, “A spiking network model of decision making employing rewarded stdp,” PloS one, vol. 9, no. 3, p. e90821, 2014.

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BibTeX entry
@inproceedings{oai:it.cnr:prodotti:457530,
	title = {Assessing pattern recognition performance of neuronal cultures through accurate simulation},
	author = {Lagani G and Mazziotti R and Falchi F and Gennaro C and Cicchini Gm and Pizzorusso T and Cremisi F and Amato G},
	doi = {10.1109/ner49283.2021.9441166 and 10.48550/arxiv.2012.10355},
	booktitle = {INTERNATIONAL IEEE/EMBS CONFERENCE ON NEURAL ENGINEERING, pp. 726-729. Online, 4-6/05/2021},
	year = {2021}
}

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