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2025
Journal article
Open Access
A FAIR and open geographic data collection for the Massaciuccoli Lake basin wetland in Italy
Vannini G. L., Bove P., Coro G.
The creation of a catalogue of geodata harmonised over time and space is essential for describing the status of ecosystem services in wetlands. In the present work, a specific methodology has been developed for the collection and generation of spatially and temporally harmonized geographic data to describe essential ecological and socio-economic charactesristics of the Massaciuccoli Lake basin (Tuscany, Italy), while providing a re-usable methodology for other areas. We developed a methodology, which we called ‘Geodata Layers Harmonization Methodology’ (GLHM), divided into four main phases: Geodata Census (GC), Geodata Selection (GS), Geodata Alignment (GA), and Geodata Publication (GP). The first phase, GC, involved a census of geodata made available online by public institutions, prioritizing those most relevant for describing ecosystem services, such as climatic, agro-environmental, pedo-geological, and biodiversity variables, with a preference for detailed data at the local level. The metadata of the collected geodata were organized into a structured tabular format. In the GS phase, geodata were selected based on a spatial resolution compatible with regional-scale ecological models (maximum 0.0005° ≈ 50 m), and a temporal coverage that could represent from remote past to far future scenarios. Geodata with partial spatial coverage or unsuitable for ecological models were excluded. Additionally, we evaluated the compliance of the geodata published on the websites of public institutions with the Findable-Accessible-Interoperable-Reusable (FAIR) principles through a newly developed scoring system. Based on this score, we selected only the data that exceeded a minimum FAIRness threshold. In the GA phase, the selected geodata were aligned semantically (i.e., by variable meaning), temporally, and spatially. Each geodata was georeferenced using the WGS84/EPSG:4326 reference system and clipped to the boundaries of the Massaciuccoli Lake basin. Raster data were resampled to achieve a uniform spatial resolution of 0.0005°. In the last phase, GP, the aligned geodata were published on public access repositories and services: The entire collection was organized as a QGIS project with legends and a metadata table associated. An Atlas was also produced, in PDF format, which visually represented the data and metadata. The geodata and their corresponding legends were exposed through Web Map Service (WMS) and Web feature Service (WFS) standards on a GeoServer instance and catalogued in a GeoNetwork instance, compliant with the ISO19139 standard and the INSPIRE European Directive. The collection contains 148 geo-datasets, representing 75 climatic, agro-environmental, pedo-geological, morphological, ecological, biological, and socio-economic information distributed across five temporal reference time frames: a remote past (1950–1980), a near past (1981–2015), the present (2016–2024), a near future (2025–2050), and a far future (2051–2100). Future projections are available under the Representative Concentration Pathways (RPC) 2.6, 4.5, and 8.5 to simulate low, medium, and high greenhouse gas concentration scenarios respectively. The present geodata collection is particularly useful for wetland monitoring, management and planning. It can easily be integrated with ecological models and predictive studies to analyse the effects of climate change and anthropogenic pressures on wetlands. The GLHM methodology is applicable to other ecological contexts to create standardised structured frameworks for evaluating the status of the biodiversity and the ecosystem services and the interplay between anthropic pressures and the ecosystem response.Source: DATA IN BRIEF, vol. 59
DOI: 10.1016/j.dib.2025.111303
Project(s): EcoScope
Metrics:
Vannini G. L., Bove P., Coro G.
The creation of a catalogue of geodata harmonised over time and space is essential for describing the status of ecosystem services in wetlands. In the present work, a specific methodology has been developed for the collection and generation of spatially and temporally harmonized geographic data to describe essential ecological and socio-economic charactesristics of the Massaciuccoli Lake basin (Tuscany, Italy), while providing a re-usable methodology for other areas. We developed a methodology, which we called ‘Geodata Layers Harmonization Methodology’ (GLHM), divided into four main phases: Geodata Census (GC), Geodata Selection (GS), Geodata Alignment (GA), and Geodata Publication (GP). The first phase, GC, involved a census of geodata made available online by public institutions, prioritizing those most relevant for describing ecosystem services, such as climatic, agro-environmental, pedo-geological, and biodiversity variables, with a preference for detailed data at the local level. The metadata of the collected geodata were organized into a structured tabular format. In the GS phase, geodata were selected based on a spatial resolution compatible with regional-scale ecological models (maximum 0.0005° ≈ 50 m), and a temporal coverage that could represent from remote past to far future scenarios. Geodata with partial spatial coverage or unsuitable for ecological models were excluded. Additionally, we evaluated the compliance of the geodata published on the websites of public institutions with the Findable-Accessible-Interoperable-Reusable (FAIR) principles through a newly developed scoring system. Based on this score, we selected only the data that exceeded a minimum FAIRness threshold. In the GA phase, the selected geodata were aligned semantically (i.e., by variable meaning), temporally, and spatially. Each geodata was georeferenced using the WGS84/EPSG:4326 reference system and clipped to the boundaries of the Massaciuccoli Lake basin. Raster data were resampled to achieve a uniform spatial resolution of 0.0005°. In the last phase, GP, the aligned geodata were published on public access repositories and services: The entire collection was organized as a QGIS project with legends and a metadata table associated. An Atlas was also produced, in PDF format, which visually represented the data and metadata. The geodata and their corresponding legends were exposed through Web Map Service (WMS) and Web feature Service (WFS) standards on a GeoServer instance and catalogued in a GeoNetwork instance, compliant with the ISO19139 standard and the INSPIRE European Directive. The collection contains 148 geo-datasets, representing 75 climatic, agro-environmental, pedo-geological, morphological, ecological, biological, and socio-economic information distributed across five temporal reference time frames: a remote past (1950–1980), a near past (1981–2015), the present (2016–2024), a near future (2025–2050), and a far future (2051–2100). Future projections are available under the Representative Concentration Pathways (RPC) 2.6, 4.5, and 8.5 to simulate low, medium, and high greenhouse gas concentration scenarios respectively. The present geodata collection is particularly useful for wetland monitoring, management and planning. It can easily be integrated with ecological models and predictive studies to analyse the effects of climate change and anthropogenic pressures on wetlands. The GLHM methodology is applicable to other ecological contexts to create standardised structured frameworks for evaluating the status of the biodiversity and the ecosystem services and the interplay between anthropic pressures and the ecosystem response.Source: DATA IN BRIEF, vol. 59
DOI: 10.1016/j.dib.2025.111303
Project(s): EcoScope
Metrics:
See at:
CNR IRIS 
| www.sciencedirect.com | CNR IRIS 
2025
Other
Restricted
InfraScience research activity report 2024
Angioni S., Artini M., Assante M., Atzori C., Baglioni M., Bardi A., Bosio C., Bove P., Calanducci A., Candela L., Casini G., Castelli D., Cirillo R., Coro G., De Bonis M., Debole F., Dell'Amico A., Frosini L., Ibrahim Ahmed, La Bruzzo S., Lelii L., Manghi P., Mangiacrapa F., Mangione D., Mannocci A., Molinaro E., Oliviero A., Pagano P., Panichi G., Teresa M. T., Pavone G., Peccerillo B., Piccioli T., Procaccini M., Straccia U., Vannini G. L., Versienti L.
InfraScience is a research group within the Institute of Information Science and Technologies (ISTI) of the National Research Council of Italy (CNR), based in Pisa. This activity report outlines the group's research achievements and initiatives throughout 2024. InfraScience focused its efforts on key challenges in the areas of Data Infrastructures, e-Science, and Intelligent Systems, maintaining a strong synergy between research and development and a firm commitment to open science principles. In 2024, the group played a leading role in the development and evolution of two major Open Science infrastructures: D4Science and OpenAIRE. InfraScience researchers contributed significantly to the scientific community through the publication of peer-reviewed papers, active participation in EU-funded research projects, organization of international conferences and training activities, and engagement in various working groups and task forces. This report highlights these contributions and underscores the group's ongoing dedication to advancing open, collaborative, and impactful science.DOI: 10.32079/isti-ar-2025/001
Metrics:
Angioni S., Artini M., Assante M., Atzori C., Baglioni M., Bardi A., Bosio C., Bove P., Calanducci A., Candela L., Casini G., Castelli D., Cirillo R., Coro G., De Bonis M., Debole F., Dell'Amico A., Frosini L., Ibrahim Ahmed, La Bruzzo S., Lelii L., Manghi P., Mangiacrapa F., Mangione D., Mannocci A., Molinaro E., Oliviero A., Pagano P., Panichi G., Teresa M. T., Pavone G., Peccerillo B., Piccioli T., Procaccini M., Straccia U., Vannini G. L., Versienti L.
InfraScience is a research group within the Institute of Information Science and Technologies (ISTI) of the National Research Council of Italy (CNR), based in Pisa. This activity report outlines the group's research achievements and initiatives throughout 2024. InfraScience focused its efforts on key challenges in the areas of Data Infrastructures, e-Science, and Intelligent Systems, maintaining a strong synergy between research and development and a firm commitment to open science principles. In 2024, the group played a leading role in the development and evolution of two major Open Science infrastructures: D4Science and OpenAIRE. InfraScience researchers contributed significantly to the scientific community through the publication of peer-reviewed papers, active participation in EU-funded research projects, organization of international conferences and training activities, and engagement in various working groups and task forces. This report highlights these contributions and underscores the group's ongoing dedication to advancing open, collaborative, and impactful science.DOI: 10.32079/isti-ar-2025/001
Metrics:
2024
Journal article
Open Access
An open science automatic workflow for multi-model species distribution estimation
Coro Gianpaolo, Sana Lorenzo, Bove Pasquale
Integrated Environmental Assessment systems and ecosystem models study the links between anthropogenic and climatic pressures on marine ecosystems and help understand how to manage the effects of the unsustainable exploitation of ocean resources. However, these models have long implementation times, data and model interoperability issues and require heterogeneous competencies. Therefore, they would benefit from simplification, automatisation, and enhanced integrability of the underlying models. Artificial Intelligence can help overcome several limitations by speeding up the modelling of crucial functional parts, e.g. estimating the environmental conditions fostering a species’ persistence and proliferation in an area (the species’ ecological niche) and, consequently, its geographical distribution. This paper presents a full-automatic workflow to estimate species’ distributions through statistical and machine learning models. It embeds four ecological niche models with complementary approaches, i.e. Artificial Neural Networks, Maximum Entropy, Support Vector Machines, and AquaMaps. It automatically estimates the optimal model parametrisations and decision thresholds to distinguish between suitable- and unsuitable-habitat locations and combines the models within one ensemble model. Finally, it combines several ensemble models to produce a species richness map (biodiversity index). The software is open-source, Open Science compliant, and available as a Web Processing Service-standardised cloud computing service that enhances efficiency, integrability, cross-domain reusability, and experimental reproduction and repetition. We first assess workflow stability and sensitivity and then demonstrate effectiveness by producing a biodiversity index for the Mediterranean based on $$\sim $$1500 species data. Moreover, we predict the spread of the invasive Siganus rivulatus in the Mediterranean and its current and future overlap with the native Sarpa salpa under different climate change scenarios.Source: INTERNATIONAL JOURNAL OF DATA SCIENCE AND ANALYTICS
DOI: 10.1007/s41060-024-00517-w
Project(s): EcoScope, ITINERIS PNRR Italian project
Metrics:
Coro Gianpaolo, Sana Lorenzo, Bove Pasquale
Integrated Environmental Assessment systems and ecosystem models study the links between anthropogenic and climatic pressures on marine ecosystems and help understand how to manage the effects of the unsustainable exploitation of ocean resources. However, these models have long implementation times, data and model interoperability issues and require heterogeneous competencies. Therefore, they would benefit from simplification, automatisation, and enhanced integrability of the underlying models. Artificial Intelligence can help overcome several limitations by speeding up the modelling of crucial functional parts, e.g. estimating the environmental conditions fostering a species’ persistence and proliferation in an area (the species’ ecological niche) and, consequently, its geographical distribution. This paper presents a full-automatic workflow to estimate species’ distributions through statistical and machine learning models. It embeds four ecological niche models with complementary approaches, i.e. Artificial Neural Networks, Maximum Entropy, Support Vector Machines, and AquaMaps. It automatically estimates the optimal model parametrisations and decision thresholds to distinguish between suitable- and unsuitable-habitat locations and combines the models within one ensemble model. Finally, it combines several ensemble models to produce a species richness map (biodiversity index). The software is open-source, Open Science compliant, and available as a Web Processing Service-standardised cloud computing service that enhances efficiency, integrability, cross-domain reusability, and experimental reproduction and repetition. We first assess workflow stability and sensitivity and then demonstrate effectiveness by producing a biodiversity index for the Mediterranean based on $$\sim $$1500 species data. Moreover, we predict the spread of the invasive Siganus rivulatus in the Mediterranean and its current and future overlap with the native Sarpa salpa under different climate change scenarios.Source: INTERNATIONAL JOURNAL OF DATA SCIENCE AND ANALYTICS
DOI: 10.1007/s41060-024-00517-w
Project(s): EcoScope
, ITINERIS PNRR Italian projectMetrics:
See at:
International Journal of Data Science and Analytics | CNR IRIS | CNR IRIS
2024
Journal article
Open Access
Climate change effects on animal presence in the Massaciuccoli Lake basin
Coro G., Bove P., Baneschi I., Bertini A., Calvisi L., Provenzale A.
Big-data mining approaches based on Artificial Intelligence models can help forecast biodiversity changes before they happen. These approaches can predict macroscopic species distribution patterns and trends that can inform preventive measures to avoid the loss of ecosystem functions and services. They can, therefore, help study and mitigate climate change implications on biodiversity conservation in fragile ecosystems. Wetlands are particularly fragile ecosystems where climate change poses severe risks and has dramatically reduced their size over the past century, with profound consequences on biodiversity and ecosystem services. Through big-data mining approaches, we can predict future wetland biodiversity trends in the context of climate change. This paper proposes such predictive analysis for a specific wetland: The Massaciuccoli Lake basin in Tuscany, Italy. This basin is a critical tourist attraction due to its rich biodiversity, making it an area of interest for citizens, tourists, and scientists. However, the region's suitability for native and non-native species is at risk due to climate and land-use change. Using machine-learning models, we predict the potential effects of climate change on animal spatial distribution in the basin under different greenhouse gas emission scenarios. The results suggest that habitat suitability has generally improved from 1950 to today, presumably owing to the targeted conservation strategies adopted in the area, but climate change will severely reduce bird biodiversity by 2050 while favouring several insect species' proliferation and other species' habitat change, even under a medium-emission scenario. This will lead to significant changes in the basin's biodiversity. Our methodology is adaptable to other wetland basins, being fully based on open data and models. The spatially explicit modelling used in this research provides valuable information for policymakers and spatial planners, complementing traditional biodiversity trend analyses.Source: ECOLOGICAL INFORMATICS, vol. 81
DOI: 10.1016/j.ecoinf.2024.102644
Project(s): ITINERIS
Metrics:
Coro G., Bove P., Baneschi I., Bertini A., Calvisi L., Provenzale A.
Big-data mining approaches based on Artificial Intelligence models can help forecast biodiversity changes before they happen. These approaches can predict macroscopic species distribution patterns and trends that can inform preventive measures to avoid the loss of ecosystem functions and services. They can, therefore, help study and mitigate climate change implications on biodiversity conservation in fragile ecosystems. Wetlands are particularly fragile ecosystems where climate change poses severe risks and has dramatically reduced their size over the past century, with profound consequences on biodiversity and ecosystem services. Through big-data mining approaches, we can predict future wetland biodiversity trends in the context of climate change. This paper proposes such predictive analysis for a specific wetland: The Massaciuccoli Lake basin in Tuscany, Italy. This basin is a critical tourist attraction due to its rich biodiversity, making it an area of interest for citizens, tourists, and scientists. However, the region's suitability for native and non-native species is at risk due to climate and land-use change. Using machine-learning models, we predict the potential effects of climate change on animal spatial distribution in the basin under different greenhouse gas emission scenarios. The results suggest that habitat suitability has generally improved from 1950 to today, presumably owing to the targeted conservation strategies adopted in the area, but climate change will severely reduce bird biodiversity by 2050 while favouring several insect species' proliferation and other species' habitat change, even under a medium-emission scenario. This will lead to significant changes in the basin's biodiversity. Our methodology is adaptable to other wetland basins, being fully based on open data and models. The spatially explicit modelling used in this research provides valuable information for policymakers and spatial planners, complementing traditional biodiversity trend analyses.Source: ECOLOGICAL INFORMATICS, vol. 81
DOI: 10.1016/j.ecoinf.2024.102644
Project(s): ITINERIS
Metrics:
See at:
Ecological Informatics | IRIS Cnr | IRIS Cnr | CNR IRIS
2023
Journal article
Open Access
Global-scale parameters for ecological models
Coro G, Bove P, Kesnerreyes K
This paper presents a collection of environmental, geophysical, and other marine-related data for marine ecological models and ecological-niche models. It consists of 2132 raster data for 58 distinct parameters at regional and global scales in the ESRI-GRID ASCII format. Most data originally belonged to open data owned by the authors of this article but residing on heterogeneous repositories with different formats and resolutions. Other data were specifically created for the present publication. The collection includes 565 data with global scale range; 154 at 0.5° resolution and 411 at 0.1° resolution; 196 data with annual temporal aggregation over ~10 key years between 1950 and 2100; 369 data with monthly aggregation at 0.1° resolution from January 2017 to ~May 2021 continuously. Data were also cut out on 8 European marine regions. The collection also includes forecasts for different future scenarios such as the Representative Concentration Pathways 2.6 (63 data), 4.5 (162 data), and 8.5 (162 data), and the A2 scenario of the Intergovernmental Panel on Climate Change (180 data).Source: SCIENTIFIC DATA, vol. 10 (issue 7)
DOI: 10.1038/s41597-022-01904-3
Project(s): EcoScope
Metrics:
Coro G, Bove P, Kesnerreyes K
This paper presents a collection of environmental, geophysical, and other marine-related data for marine ecological models and ecological-niche models. It consists of 2132 raster data for 58 distinct parameters at regional and global scales in the ESRI-GRID ASCII format. Most data originally belonged to open data owned by the authors of this article but residing on heterogeneous repositories with different formats and resolutions. Other data were specifically created for the present publication. The collection includes 565 data with global scale range; 154 at 0.5° resolution and 411 at 0.1° resolution; 196 data with annual temporal aggregation over ~10 key years between 1950 and 2100; 369 data with monthly aggregation at 0.1° resolution from January 2017 to ~May 2021 continuously. Data were also cut out on 8 European marine regions. The collection also includes forecasts for different future scenarios such as the Representative Concentration Pathways 2.6 (63 data), 4.5 (162 data), and 8.5 (162 data), and the A2 scenario of the Intergovernmental Panel on Climate Change (180 data).Source: SCIENTIFIC DATA, vol. 10 (issue 7)
DOI: 10.1038/s41597-022-01904-3
Project(s): EcoScope
Metrics:
See at:
CNR IRIS | ISTI Repository | www.nature.com | CNR IRIS
2023
Journal article
Open Access
Estimating hidden fishing activity hotspots from vessel transmitted data
Coro G, Sana L, Ferrà C, Bove P, Scarcella G
Monitoring fishery activity is essential for resource planning and guaranteeing fisheries sustainability. Large fishing vessels constantly and continuously communicate their positions via Automatic Identification System (AIS) or Vessel Monitoring Systems (VMSs). These systems can use radio or Global Positioning System (GPS) devices to transmit data. Processing and integrating these big data with other fisheries data allows for exploring the relations between socio-economic and ecosystem assets in marine areas, which is fundamental in fishery monitoring. In this context, estimating actual fishing activity from time series of AIS and VMS data would enhance the correct identification of fishing activity patterns and help assess regulations' effectiveness. However, these data might contain gaps because of technical issues such as limited coverage of the terrestrial receivers or saturated transmission bands. Other sources of data gaps are adverse meteorological conditions and voluntary switch-offs. Gaps may also include hidden (unreported) fishing activity whose quantification would improve actual fishing activity estimation. This paper presents a workflow for AIS/VMS big-data analysis that estimates potential unreported fishing activity hotspots in a marine area. The workflow uses a statistical spatial analysis over vessel speeds and coordinates and a multi-source data integration approach that can work on multiple areas and multiple analysis scales. Specifically, it (i) estimates fishing activity locations and rebuilds data gaps, (ii) estimates the potential unreported fishing hour distribution and the unreported-over-total ratio of fishing hours at a 0.01° spatial resolution, (iii) identifies potential unreported fishing activity hotspots, (iv) extracts the stocks involved in these hotspots (using global-scale repositories of stock and species observation data) and raises an alert about their possible endangered, threatened, and protected (ETP) status. The workflow is also a free-to-use Web Service running on an open science-compliant cloud computing platform with a Web Processing Service (WPS) standard interface, allowing efficient big data processing. As a study case, we focussed on the Adriatic Sea. We reconstructed the monthly reported and potential unreported trawling activity in 2019, using terrestrial AIS data with a 5-min sampling period, containing ~50 million records transmitted by ~1,600 vessels. The results highlight that the unreported fishing activity hotspots especially impacted Italian coasts and some forbidden and protected areas. The potential unreported activity involved 33 stocks, four of which were ETP species in the basin. The extracted information agreed with expert studies, and the estimated trawling patterns agreed with those produced by the Global Fishing Watch.Source: FRONTIERS IN SUSTAINABLE FOOD SYSTEMS, vol. 7
DOI: 10.3389/fsufs.2023.1152226
Project(s): EcoScope
Metrics:
Coro G, Sana L, Ferrà C, Bove P, Scarcella G
Monitoring fishery activity is essential for resource planning and guaranteeing fisheries sustainability. Large fishing vessels constantly and continuously communicate their positions via Automatic Identification System (AIS) or Vessel Monitoring Systems (VMSs). These systems can use radio or Global Positioning System (GPS) devices to transmit data. Processing and integrating these big data with other fisheries data allows for exploring the relations between socio-economic and ecosystem assets in marine areas, which is fundamental in fishery monitoring. In this context, estimating actual fishing activity from time series of AIS and VMS data would enhance the correct identification of fishing activity patterns and help assess regulations' effectiveness. However, these data might contain gaps because of technical issues such as limited coverage of the terrestrial receivers or saturated transmission bands. Other sources of data gaps are adverse meteorological conditions and voluntary switch-offs. Gaps may also include hidden (unreported) fishing activity whose quantification would improve actual fishing activity estimation. This paper presents a workflow for AIS/VMS big-data analysis that estimates potential unreported fishing activity hotspots in a marine area. The workflow uses a statistical spatial analysis over vessel speeds and coordinates and a multi-source data integration approach that can work on multiple areas and multiple analysis scales. Specifically, it (i) estimates fishing activity locations and rebuilds data gaps, (ii) estimates the potential unreported fishing hour distribution and the unreported-over-total ratio of fishing hours at a 0.01° spatial resolution, (iii) identifies potential unreported fishing activity hotspots, (iv) extracts the stocks involved in these hotspots (using global-scale repositories of stock and species observation data) and raises an alert about their possible endangered, threatened, and protected (ETP) status. The workflow is also a free-to-use Web Service running on an open science-compliant cloud computing platform with a Web Processing Service (WPS) standard interface, allowing efficient big data processing. As a study case, we focussed on the Adriatic Sea. We reconstructed the monthly reported and potential unreported trawling activity in 2019, using terrestrial AIS data with a 5-min sampling period, containing ~50 million records transmitted by ~1,600 vessels. The results highlight that the unreported fishing activity hotspots especially impacted Italian coasts and some forbidden and protected areas. The potential unreported activity involved 33 stocks, four of which were ETP species in the basin. The extracted information agreed with expert studies, and the estimated trawling patterns agreed with those produced by the Global Fishing Watch.Source: FRONTIERS IN SUSTAINABLE FOOD SYSTEMS, vol. 7
DOI: 10.3389/fsufs.2023.1152226
Project(s): EcoScope
Metrics:
See at:
CNR IRIS | ISTI Repository | www.frontiersin.org | CNR IRIS
2023
Other
Open Access
InfraScience research activity report 2023
Artini M., Assante M., Atzori C., Baglioni M., Bardi A., Bosio C., Bove P., Calanducci A., Candela L., Casini G., Castelli D., Cirillo R., Coro G., De Bonis M., Debole F., Dell'Amico A., Frosini L., Ibrahim A. S. T., La Bruzzo S., Lelii L., Manghi P., Mangiacrapa F., Mangione D., Mannocci A., Molinaro E., Pagano P., Panichi G., Paratore M. T., Pavone G., Piccioli T., Sinibaldi F., Straccia U., Vannini G. L.
InfraScience is a research group of the National Research Council of Italy - Institute of Information Science and Technologies (CNR - ISTI) based in Pisa, Italy. This report documents the research activity performed by this group in 2023 to highlight the major results. In particular, the InfraScience group engaged in research challenges characterising Data Infrastructures, e-Science, and Intelligent Systems. The group activity is pursued by closely connecting research and development and by promoting and supporting open science. In fact, the group is leading the development of two large scale infrastructures for Open Science, i.e. D4Science and OpenAIRE. During 2023 InfraScience members contributed to the publishing of several papers, to the research and development activities of several research projects (primarily funded by EU), to the organization of conferences and training events, to several working groups and task forces.DOI: 10.32079/isti-ar-2023/002
Project(s): Blue Cloud, EOSC Future , TAILOR
Metrics:
Artini M., Assante M., Atzori C., Baglioni M., Bardi A., Bosio C., Bove P., Calanducci A., Candela L., Casini G., Castelli D., Cirillo R., Coro G., De Bonis M., Debole F., Dell'Amico A., Frosini L., Ibrahim A. S. T., La Bruzzo S., Lelii L., Manghi P., Mangiacrapa F., Mangione D., Mannocci A., Molinaro E., Pagano P., Panichi G., Paratore M. T., Pavone G., Piccioli T., Sinibaldi F., Straccia U., Vannini G. L.
InfraScience is a research group of the National Research Council of Italy - Institute of Information Science and Technologies (CNR - ISTI) based in Pisa, Italy. This report documents the research activity performed by this group in 2023 to highlight the major results. In particular, the InfraScience group engaged in research challenges characterising Data Infrastructures, e-Science, and Intelligent Systems. The group activity is pursued by closely connecting research and development and by promoting and supporting open science. In fact, the group is leading the development of two large scale infrastructures for Open Science, i.e. D4Science and OpenAIRE. During 2023 InfraScience members contributed to the publishing of several papers, to the research and development activities of several research projects (primarily funded by EU), to the organization of conferences and training events, to several working groups and task forces.DOI: 10.32079/isti-ar-2023/002
Project(s): Blue Cloud
, EOSC Future , TAILOR Metrics:
2022
Journal article
Open Access
A high-resolution global-scale model for COVID-19 infection rate
Coro G, Bove P
Several models have correlated COVID-19 spread with specific climatic, geophysical, and air pollution conditions , and early models had predicted the lowering of infection cases in Summer 2020. These approaches have been criticized for their coarse assumptions and because they could produce biases if used without considering dynamic factors such as human mobility and interaction. However, human mobility and interaction models alone have not been able to suggest more innovative recommendations than simple social distancing and lockdown, and would definitely need to include information about the base environmental suitability of a World area to COVID-19 spread. This scenario would benefit from a global-scale high-resolution environmental model that could be coupled with dynamic models for large-scale and regional analyses. This article presents a 0.1°high-resolution global-scale probability map of low and high-infection-rates of COVID-19 that uses annual-average surface air temperature, precipitation, and CO 2 as environmental parameters, and Italian provinces as training locations. A risk index calculated on this map correctly identifies 87% of the World countries that reported high infection rates in 2020 and 80% of the low and high infection-rate countries overall. Our model is meant to be used as an additional factor in other models for monthly weather and human mobility. It estimates the base environmental inertia that a geographical place opposes to COVID-19 when mobility restrictions are not in place and can support how much the monthly weather favors or penalizes infection increase. Its high resolution and extent make it consistently usable in global and regional-scale analyses, also thanks to the availability of our results as FAIR data and software as an Open Science-oriented Web service.Source: ACM TRANSACTIONS ON SPATIAL ALGORITHMS AND SYSTEMS, vol. 8 (issue 3)
DOI: 10.1145/3494531
Project(s): EOSCsecretariat.eu
Metrics:
Coro G, Bove P
Several models have correlated COVID-19 spread with specific climatic, geophysical, and air pollution conditions , and early models had predicted the lowering of infection cases in Summer 2020. These approaches have been criticized for their coarse assumptions and because they could produce biases if used without considering dynamic factors such as human mobility and interaction. However, human mobility and interaction models alone have not been able to suggest more innovative recommendations than simple social distancing and lockdown, and would definitely need to include information about the base environmental suitability of a World area to COVID-19 spread. This scenario would benefit from a global-scale high-resolution environmental model that could be coupled with dynamic models for large-scale and regional analyses. This article presents a 0.1°high-resolution global-scale probability map of low and high-infection-rates of COVID-19 that uses annual-average surface air temperature, precipitation, and CO 2 as environmental parameters, and Italian provinces as training locations. A risk index calculated on this map correctly identifies 87% of the World countries that reported high infection rates in 2020 and 80% of the low and high infection-rate countries overall. Our model is meant to be used as an additional factor in other models for monthly weather and human mobility. It estimates the base environmental inertia that a geographical place opposes to COVID-19 when mobility restrictions are not in place and can support how much the monthly weather favors or penalizes infection increase. Its high resolution and extent make it consistently usable in global and regional-scale analyses, also thanks to the availability of our results as FAIR data and software as an Open Science-oriented Web service.Source: ACM TRANSACTIONS ON SPATIAL ALGORITHMS AND SYSTEMS, vol. 8 (issue 3)
DOI: 10.1145/3494531
Project(s): EOSCsecretariat.eu
Metrics:
See at:
dl.acm.org | CNR IRIS | ISTI Repository | CNR IRIS
2022
Journal article
Open Access
Habitat distribution change of commercial species in the Adriatic Sea during the COVID-19 pandemic
Coro G, Bove P, Ellenbroek A
The COVID-19 pandemic has led to reduced anthropogenic pressure on ecosystems in several world areas, but resulting ecosystem responses in these areas have not been investigated. This paper presents an approach to make quick assessments of potential habitat changes in 2020 of eight marine species of commercial importance in the Adriatic Sea. Measurements from floating probes are interpolated through an advection-equation based model. The resulting distributions are then combined with species observations through an ecological niche model to estimate habitat distributions in the past years (2015-2018) at 0.1° spatial resolution. Habitat patterns over 2019 and 2020 are then extracted and explained in terms of specific environmental parameter changes. These changes are finally assessed for their potential dependency on climate change patterns and anthropogenic pressure change due to the pandemic. Our results demonstrate that the combined effect of climate change and the pandemic could have heterogeneous effects on habitat distributions: three species (Squilla mantis, Engraulis encrasicolus, and Solea solea) did not show significant niche distribution change; habitat suitability positively changed for Sepia officinalis, but negatively for Parapenaeus longirostris, due to increased temperature and decreasing dissolved oxygen (in the Adriatic) generally correlated with climate change; the combination of these trends with an average decrease in chlorophyll, probably due to the pandemic, extended the habitat distributions of Merluccius merluccius and Mullus barbatus but reduced Sardina pilchardus distribution. Although our results are based on approximated data and reliable at a macroscopic level, we present a very early insight of modifications that will possibly be observed years after the end of the pandemic when complete data will be available. Our approach is entirely based on Findable, Accessible, Interoperable, and Reusable (FAIR) data and is general enough to be used for other species and areas.Source: ECOLOGICAL INFORMATICS, vol. 69
DOI: 10.1016/j.ecoinf.2022.101675
Project(s): Blue Cloud
Metrics:
Coro G, Bove P, Ellenbroek A
The COVID-19 pandemic has led to reduced anthropogenic pressure on ecosystems in several world areas, but resulting ecosystem responses in these areas have not been investigated. This paper presents an approach to make quick assessments of potential habitat changes in 2020 of eight marine species of commercial importance in the Adriatic Sea. Measurements from floating probes are interpolated through an advection-equation based model. The resulting distributions are then combined with species observations through an ecological niche model to estimate habitat distributions in the past years (2015-2018) at 0.1° spatial resolution. Habitat patterns over 2019 and 2020 are then extracted and explained in terms of specific environmental parameter changes. These changes are finally assessed for their potential dependency on climate change patterns and anthropogenic pressure change due to the pandemic. Our results demonstrate that the combined effect of climate change and the pandemic could have heterogeneous effects on habitat distributions: three species (Squilla mantis, Engraulis encrasicolus, and Solea solea) did not show significant niche distribution change; habitat suitability positively changed for Sepia officinalis, but negatively for Parapenaeus longirostris, due to increased temperature and decreasing dissolved oxygen (in the Adriatic) generally correlated with climate change; the combination of these trends with an average decrease in chlorophyll, probably due to the pandemic, extended the habitat distributions of Merluccius merluccius and Mullus barbatus but reduced Sardina pilchardus distribution. Although our results are based on approximated data and reliable at a macroscopic level, we present a very early insight of modifications that will possibly be observed years after the end of the pandemic when complete data will be available. Our approach is entirely based on Findable, Accessible, Interoperable, and Reusable (FAIR) data and is general enough to be used for other species and areas.Source: ECOLOGICAL INFORMATICS, vol. 69
DOI: 10.1016/j.ecoinf.2022.101675
Project(s): Blue Cloud
Metrics:
See at:
CNR IRIS | ISTI Repository | CNR IRIS | CNR IRIS
2022
Journal article
Open Access
Filling gaps in trawl surveys at sea through spatiotemporal and environmental modelling
Coro G, Bove P, Armelloni En, Masnadi F, Scanu M, Scarcella G
International scientific fishery survey programmes systematically collect samples of target stocks' biomass and abundance and use them as the basis to estimate stock status in the framework of stock assessment models. The research surveys can also inform decision makers about Essential Fish Habitat conservation and help define harvest control rules based on direct observation of biomass at the sea. However, missed survey locations over the survey years are common in long-term programme data. Currently, modelling approaches to filling gaps in spatiotemporal survey data range from quickly applicable solutions to complex modelling. Most models require setting prior statistical assumptions on spatial distributions, assuming short-term temporal dependency between the data, and scarcely considering the environmental aspects that might have influenced stock presence in the missed locations. This paper proposes a statistical and machine learning based model to fill spatiotemporal gaps in survey data and produce robust estimates for stock assessment experts, decision makers, and regional fisheries management organizations. We apply our model to the SoleMon survey data in North-Central Adriatic Sea (Mediterranean Sea) for 4 stocks: Sepia officinalis, Solea solea, Squilla mantis, and Pecten jacobaeus. We reconstruct the biomass-index (i.e., biomass over the swept area) of 10 locations missed in 2020 (out of the 67 planned) because of several factors, including COVID-19 pandemic related restrictions. We evaluate model performance on 2019 data with respect to an alternative index that assumes biomass proportion consistency over time. Our model's novelty is that it combines three complementary components. A spatial component estimates stock biomass-index in the missed locations in one year, given the surveyed location's biomass-index distribution in the same year. A temporal component forecasts, for each missed survey location, biomass-index given the data history of that haul. An environmental component estimates a biomass-index weighting factor based on the environmental suitability of the haul area to species presence. Combining these components allows understanding the interplay between environmental-change drivers, stock presence, and fisheries. Our model formulation is general enough to be applied to other survey data with lower spatial homogeneity and more temporal gaps than the SoleMon dataset.Source: FRONTIERS IN MARINE SCIENCE, vol. 9 (issue 919339)
DOI: 10.3389/fmars.2022.919339
Project(s): EcoScope
Metrics:
Coro G, Bove P, Armelloni En, Masnadi F, Scanu M, Scarcella G
International scientific fishery survey programmes systematically collect samples of target stocks' biomass and abundance and use them as the basis to estimate stock status in the framework of stock assessment models. The research surveys can also inform decision makers about Essential Fish Habitat conservation and help define harvest control rules based on direct observation of biomass at the sea. However, missed survey locations over the survey years are common in long-term programme data. Currently, modelling approaches to filling gaps in spatiotemporal survey data range from quickly applicable solutions to complex modelling. Most models require setting prior statistical assumptions on spatial distributions, assuming short-term temporal dependency between the data, and scarcely considering the environmental aspects that might have influenced stock presence in the missed locations. This paper proposes a statistical and machine learning based model to fill spatiotemporal gaps in survey data and produce robust estimates for stock assessment experts, decision makers, and regional fisheries management organizations. We apply our model to the SoleMon survey data in North-Central Adriatic Sea (Mediterranean Sea) for 4 stocks: Sepia officinalis, Solea solea, Squilla mantis, and Pecten jacobaeus. We reconstruct the biomass-index (i.e., biomass over the swept area) of 10 locations missed in 2020 (out of the 67 planned) because of several factors, including COVID-19 pandemic related restrictions. We evaluate model performance on 2019 data with respect to an alternative index that assumes biomass proportion consistency over time. Our model's novelty is that it combines three complementary components. A spatial component estimates stock biomass-index in the missed locations in one year, given the surveyed location's biomass-index distribution in the same year. A temporal component forecasts, for each missed survey location, biomass-index given the data history of that haul. An environmental component estimates a biomass-index weighting factor based on the environmental suitability of the haul area to species presence. Combining these components allows understanding the interplay between environmental-change drivers, stock presence, and fisheries. Our model formulation is general enough to be applied to other survey data with lower spatial homogeneity and more temporal gaps than the SoleMon dataset.Source: FRONTIERS IN MARINE SCIENCE, vol. 9 (issue 919339)
DOI: 10.3389/fmars.2022.919339
Project(s): EcoScope
Metrics:
See at:
CNR IRIS | ISTI Repository | www.frontiersin.org | CNR IRIS
2022
Other
Open Access
InfraScience research activity report 2021
Artini M, Assante M, Atzori C, Baglioni M, Bardi A, Bove P, Candela L, Casini G, Castelli D, Cirillo R, Coro G, De Bonis M, Debole F, Dell'Amico A, Frosini L, La Bruzzo S, Lazzeri E, Lelii L, Manghi P, Mangiacrapa F, Mangione D, Mannocci A, Ottonello E, Pagano P, Panichi G, Pavone G, Piccioli T, Sinibaldi F, Straccia U
InfraScience is a research group of the National Research Council of Italy - Institute of Information Science and Technologies (CNR - ISTI) based in Pisa, Italy. This report documents the research activity performed by this group in 2021 to highlight the major results. In particular, the InfraScience group confronted with research challenges characterising Data Infrastructures, eScience, and Intelligent Systems. The group activity is pursued by closely connecting research and development and by promoting and supporting open science. In fact, the group is leading the development of two large scale infrastructures for Open Science, i.e. D4Science and OpenAIRE. During 2021 InfraScience members contributed to the publishing of 25 papers, to the research and development activities of 18 research projects (15 funded by EU), to the organization of conferences and training events, to several working groups and task forces.DOI: 10.32079/isti-ar-2022/001
Project(s): ARIADNEplus, Blue Cloud , PerformFISH , EOSC-Pillar , DESIRA , EOSC Future , EOSCsecretariat.eu , EcoScope , RISIS 2 , OpenAIRE-Advance , OpenAIRE Nexus , SoBigData-PlusPlus
Metrics:
Artini M, Assante M, Atzori C, Baglioni M, Bardi A, Bove P, Candela L, Casini G, Castelli D, Cirillo R, Coro G, De Bonis M, Debole F, Dell'Amico A, Frosini L, La Bruzzo S, Lazzeri E, Lelii L, Manghi P, Mangiacrapa F, Mangione D, Mannocci A, Ottonello E, Pagano P, Panichi G, Pavone G, Piccioli T, Sinibaldi F, Straccia U
InfraScience is a research group of the National Research Council of Italy - Institute of Information Science and Technologies (CNR - ISTI) based in Pisa, Italy. This report documents the research activity performed by this group in 2021 to highlight the major results. In particular, the InfraScience group confronted with research challenges characterising Data Infrastructures, eScience, and Intelligent Systems. The group activity is pursued by closely connecting research and development and by promoting and supporting open science. In fact, the group is leading the development of two large scale infrastructures for Open Science, i.e. D4Science and OpenAIRE. During 2021 InfraScience members contributed to the publishing of 25 papers, to the research and development activities of 18 research projects (15 funded by EU), to the organization of conferences and training events, to several working groups and task forces.DOI: 10.32079/isti-ar-2022/001
Project(s): ARIADNEplus
, Blue Cloud , PerformFISH , EOSC-Pillar , DESIRA , EOSC Future , EOSCsecretariat.eu , EcoScope , RISIS 2 , OpenAIRE-Advance , OpenAIRE Nexus , SoBigData-PlusPlus Metrics:
See at:
CNR IRIS | ISTI Repository | CNR IRIS
2022
Other
Open Access
InfraScience research activity report 2022
Artini M, Assante M, Atzori C, Baglioni M, Bardi A, Bove P, Candela L, Casini G, Castelli D, Cirillo R, Coro G, De Bonis M, Debole F, Dell'Amico A, Frosini L, La Bruzzo S, Lelii L, Manghi P, Mangiacrapa F, Mangione D, Mannocci A, Ottonello E, Pagano P, Panichi G, Pavone G, Piccioli T, Sinibaldi F, Straccia U, Zoppi F
InfraScience is a research group of the National Research Council of Italy - Institute of Information Science and Technologies (CNR - ISTI) based in Pisa, Italy. This report documents the research activity performed by this group in 2022 to highlight the major results. In particular, the InfraScience group confronted with research challenges characterising Data Infrastructures, e-Science, and Intelligent Systems. The group activity is pursued by closely connecting research and development and by promoting and supporting open science. In fact, the group is leading the development of two large scale infrastructures for Open Science, i.e. D4Science and OpenAIRE. During 2022 InfraScience members contributed to the publishing of several papers, to the research and development activities of 18 research projects (15 funded by EU), to the organization of conferences and training events, to several working groups and task forces.DOI: 10.32079/isti-ar-2022/004
Project(s): ARIADNEplus, Blue Cloud , EOSC-Pillar , DESIRA , EOSC Future , RISIS 2 , TAILOR , SoBigData-PlusPlus
Metrics:
Artini M, Assante M, Atzori C, Baglioni M, Bardi A, Bove P, Candela L, Casini G, Castelli D, Cirillo R, Coro G, De Bonis M, Debole F, Dell'Amico A, Frosini L, La Bruzzo S, Lelii L, Manghi P, Mangiacrapa F, Mangione D, Mannocci A, Ottonello E, Pagano P, Panichi G, Pavone G, Piccioli T, Sinibaldi F, Straccia U, Zoppi F
InfraScience is a research group of the National Research Council of Italy - Institute of Information Science and Technologies (CNR - ISTI) based in Pisa, Italy. This report documents the research activity performed by this group in 2022 to highlight the major results. In particular, the InfraScience group confronted with research challenges characterising Data Infrastructures, e-Science, and Intelligent Systems. The group activity is pursued by closely connecting research and development and by promoting and supporting open science. In fact, the group is leading the development of two large scale infrastructures for Open Science, i.e. D4Science and OpenAIRE. During 2022 InfraScience members contributed to the publishing of several papers, to the research and development activities of 18 research projects (15 funded by EU), to the organization of conferences and training events, to several working groups and task forces.DOI: 10.32079/isti-ar-2022/004
Project(s): ARIADNEplus
, Blue Cloud , EOSC-Pillar , DESIRA , EOSC Future , RISIS 2 , TAILOR , SoBigData-PlusPlus Metrics:
See at:
CNR IRIS | ISTI Repository | CNR IRIS
2022
Dataset
Open Access
Monthly data at 0.1° resolution
Coro G., Bove P.
Monthly data at 0.1 deg resolutionDOI: 10.6084/m9.figshare.20044394
Project(s): EcoScope
Metrics:
Coro G., Bove P.
Monthly data at 0.1 deg resolutionDOI: 10.6084/m9.figshare.20044394
Project(s): EcoScope
Metrics: